Coding

Part:BBa_K1037000

Designed by: Zeng Jianhao   Group: iGEM13_HUST-China   (2013-09-10)

ygfG

methylmalonyl-CoA decarboxylase;catalyzes the decarboxylation of methylmalonyl-CoA to propionyl-CoA.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 172
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 631


1: we firstly send our plasmid to company for gene sequence. And do sequence alignment with data from NCBI to confirm that there is no other mutant and ORF is right.
data link of NCBI:
http://www.ncbi.nlm.nih.gov/nuccore/NC_007779.1?report=genbank&from=3062530&to=3063551
2. We than induce the cell transformed with plasmid to see ygfD expression. Follow is the photo of SDS-PAGE gel analysis.
HUST_validating_expression.png
3.To prove the function of the biobrick further! We do fermentation and use HPLC to measure the increase of propionate.Follow is the results.
800px-HUST_HPLC_result.png
Conclusion : with all these result, we proved that our biobrick is well constructed . We can see both the protein expressed and prove the function of the protein.

[edit]
Categories
//cds/enzyme
//chassis/prokaryote/ecoli
Parameters
biologyE.coli K12
n/aygfG
proteinygfG